Tiling Analysis Software

This report provides the number of intervals and bases from a BED file.

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- Option to write either CHP or BAR file. Specify option in the Export tab of the Default Properties dialog.
- Added the scaling target intensity to the file properties function.
- Enrichment analysis.

This analysis performs a simulation to assess the likelihood that the observed overlap is different from the expected overlap with no enrichment.
- Interval overlap report. This report provides the number of intervals and bases from a BED file that are within a user-specified distance of intervals from a reference BED file.
- PM only analysis of PM/MM arrays.

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Specifications
Developer:
Affymetrix, Inc.
License type:
Freeware